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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109658067_109672470_R

Intron Information:

Intron Rank:
151198
Intron Class:
major
Intron Phase:
Intron Coordinates:
109658067 - 109672470
Intron Length:
14404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.4
34
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
34.9
-1.7
3
52.2
44.4
Minor BPS
53.2
-0
1.7
64.52
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028872
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025780
109657791 - 109672588
14798