About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109696443_109705879_R

Intron Information:

Intron Rank:
154283
Intron Class:
major
Intron Phase:
Intron Coordinates:
109696443 - 109705879
Intron Length:
9437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
GGTAATATAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
85.6
0.8
0.8
80.9
31.1
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
46
-0.3
1.7
54.9
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019162
109695277 - 109706221
10945