About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109698265_109700265_F

Intron Information:

Intron Rank:
147959
Intron Class:
major
Intron Phase:
Intron Coordinates:
109698265 - 109700265
Intron Length:
2001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TTTTCTTCCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.7
37.1
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
84
0.77
0.6
80.7
24.7
Minor 5ss
35.5
-1.6
3
44.3
37.2
Minor BPS
57
0.21
1.9
75.09
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029663
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038332
109697911 - 109701054
3144