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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1097093_1097489_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1097093 - 1097489
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAACA
5'SS Class:
major
3'SS Sequence:
GTTCTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGCATTTTAACT
Flanking Amino Acid:
VTNEEIHKLEDGASDADAEL
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
74.4
36
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.9
0.7
0.8
72.9
37.4
Minor 5ss
39.3
-1.2
2.8
50.5
45.5
Minor BPS
63
0.49
1.3
71.19
39.9

Associated Gene:

Gene:
CEP41
Ensembl Gene ID:
ENSAPLG00000007184
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007489
1093743 - 1100780
7038