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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109769532_109771191_R

Intron Information:

Intron Rank:
152057
Intron Class:
major
Intron Phase:
Intron Coordinates:
109769532 - 109771191
Intron Length:
1660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTCAGTTAG
5'SS Class:
major
3'SS Sequence:
TTCCCTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
AAAATATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.2
0.26
1.3
59.9
41.8
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
82
0.72
0.7
80.3
25
Minor 5ss
37.2
-1.5
2.8
46.7
42.6
Minor BPS
56.8
0.29
1.6
70.75
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029391
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020001
109769373 - 109772873
3501