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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109824154_109833219_R

Intron Information:

Intron Rank:
148588
Intron Class:
major
Intron Phase:
Intron Coordinates:
109824154 - 109833219
Intron Length:
9066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TATTGCTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
33.5
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
73.7
0.53
0.9
70.2
39.9
Minor 5ss
37
-1.5
2.9
42.4
44.3
Minor BPS
67.1
0.53
1.9
78.12
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027380
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030285
109821802 - 109833419
11618