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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109859589_109860450_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109859589 - 109860450
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
GTATAATCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
ATTTGTATAATC
Flanking Amino Acid:
AEETQRVLLQISQLKRDKEN
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
70.1
0.45
1
59.5
45.8
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
52.4
0.06
2
69.28
36.5

Associated Gene:

Gene:
SETD4
Ensembl Gene ID:
ENSAPLG00000015936
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016631
109859454 - 109868457
9004