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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109860575_109861568_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109860575 - 109861568
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
ATTTTGATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTGTTCAAAC
Flanking Amino Acid:
LKLLSLGADEFTCWRRVLLG
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77
32.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.9
0.58
0.9
67.5
43
Minor 5ss
47.3
-0.3
2.8
67.6
37.4
Minor BPS
48.7
-0.1
2
64.64
40.8

Associated Gene:

Gene:
SETD4
Ensembl Gene ID:
ENSAPLG00000015936
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016631
109859454 - 109868457
9004