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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109864093_109865243_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109864093 - 109865243
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGTAC
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
LSSCLGEYIIKWKPPVSPLI
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
48.6
-0
1.5
49.1
46
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
SETD4
Ensembl Gene ID:
ENSAPLG00000015936
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016631
109859454 - 109868457
9004