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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109866896_109867844_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109866896 - 109867844
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGTTC
5'SS Class:
major
3'SS Sequence:
GTTTCTGCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTACTATAAAC
Flanking Amino Acid:
DSNLRPAQFQDTGRGLMTTK
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
66.7
39.8
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
80.5
0.69
0.9
77.5
36.9
Minor 5ss
40.9
-1
3.3
50.6
46.1
Minor BPS
58.7
0.25
1.7
73.65
36.5

Associated Gene:

Gene:
SETD4
Ensembl Gene ID:
ENSAPLG00000015936
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016631
109859454 - 109868457
9004