About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109867941_109868387_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109867941 - 109868387
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTCC
5'SS Class:
major
3'SS Sequence:
CTTTCATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTCTCTTTCATT
Flanking Amino Acid:
RKRLQSFMHGVNCSHKLEYI
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.5
39.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.3
0.75
0.7
81.6
29.1
Minor 5ss
37
-1.5
3.4
51.5
45.2
Minor BPS
60.1
0.4
1.8
74.65
43.4

Associated Gene:

Gene:
SETD4
Ensembl Gene ID:
ENSAPLG00000015936
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016631
109859454 - 109868457
9004