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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109869064_109870001_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109869064 - 109870001
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
TTACCATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACCAT
U12 Branch Point Sequence:
TCTTGTTTACCA
Flanking Amino Acid:
RGPGAGTQSQSYCHFGVRSE
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
59.7
46.7
Major BPS
65.6
0.39
1.3
75.1
39.4
Major PPT
79.8
0.67
0.9
73.7
35.5
Minor 5ss
26.8
-2.7
2.9
31.8
42.6
Minor BPS
55.2
0.16
2
70.26
42.8

Associated Gene:

Gene:
CBR1
Ensembl Gene ID:
ENSAPLG00000015892
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016575
109868798 - 109875763
6966