Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109891009_109892983_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109891009 - 109892983

Intron Length:

1975

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAACT

5'SS Class:

strong_major

3'SS Sequence:

TATTTCTGTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

TATTTCTGTACA

Flanking Amino Acid:

GLEEGSEIYDRTDALLVKLS

Intron Amino Acid Position:

164

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.92

0.8

83.3

27.9

Major BPS

78.6

0.71

79.6

32.9

Major PPT

81.6

0.71

0.9

76.6

37.2

Minor 5ss

30.7

-2.2

2.9

41.1

44.9

Minor BPS

58.9

0.27

1.8

73.13

38.5

Associated Gene:

Gene:

DOP1B

Ensembl Gene ID:

ENSAPLG00000015059

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015719

109884324 - 109924684

40361