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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109896312_109898231_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109896312 - 109898231
Intron Length:
1920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCGATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCGAT
U12 Branch Point Sequence:
TTTCTTTCGATT
Flanking Amino Acid:
LISLLDKPEIGPQVVGDLFL
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
73.7
0.59
1.3
72.5
43.5
Major PPT
75.9
0.58
0.9
70.3
35
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
55.4
0.25
1.5
75.87
34.9

Associated Gene:

Gene:
DOP1B
Ensembl Gene ID:
ENSAPLG00000015059
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015719
109884324 - 109924684
40361