Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109898353_109898782_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109898353 - 109898782

Intron Length:

430

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAACTA

5'SS Class:

major

3'SS Sequence:

TCCTTTTACACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TCTCCTTTTACA

Flanking Amino Acid:

SYNQSGNILASAIKENKNAS

Intron Amino Acid Position:

414

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

65.2

40.7

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

79.3

0.66

0.8

75.6

31.9

Minor 5ss

33.8

-1.8

3.5

47.8

47.6

Minor BPS

63.8

0.43

1.6

72.64

39.2

Associated Gene:

Gene:

DOP1B

Ensembl Gene ID:

ENSAPLG00000015059

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015719

109884324 - 109924684

40361