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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109898903_109899512_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109898903 - 109899512
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTTTGTT
5'SS Class:
major
3'SS Sequence:
CTCTCCATGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
GTTTACAAAATG
Flanking Amino Acid:
YMTKCFEDCFRNKSTKTRYP
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.9
33.1
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
68.9
0.43
1
62
38.6
Minor 5ss
39.3
-1.2
3.3
57.9
46.8
Minor BPS
46.3
-0.4
2.1
58.18
43.3

Associated Gene:

Gene:
DOP1B
Ensembl Gene ID:
ENSAPLG00000015059
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015719
109884324 - 109924684
40361