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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109905662_109906318_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109905662 - 109906318
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTTCC
5'SS Class:
major
3'SS Sequence:
TTTCTCTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTC
Flanking Amino Acid:
RVTSHNRSFDRSLFVVLDSL
Intron Amino Acid Position:
959

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.4
34.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.5
0.8
0.8
84.7
30.2
Minor 5ss
47.6
-0.2
2.3
62.8
41.7
Minor BPS
65.8
0.48
1.6
73.37
38.4

Associated Gene:

Gene:
DOP1B
Ensembl Gene ID:
ENSAPLG00000015059
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015719
109884324 - 109924684
40361