Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109909813_109910422_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

109909813 - 109910422

Intron Length:

610

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTCCAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTTTTATTT

Flanking Amino Acid:

AVKTSMKTSASLTTKRENVT

Intron Amino Acid Position:

1561

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.5

1.02

0.7

25.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

77.1

0.61

27.2

Minor 5ss

36.4

-1.5

3.6

55.7

48.5

Minor BPS

64.7

0.54

1.5

79.8

36.8

Associated Gene:

Gene:

DOP1B

Ensembl Gene ID:

ENSAPLG00000015059

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015719

109884324 - 109924684

40361