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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109912144_109913974_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109912144 - 109913974
Intron Length:
1831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TTTTGTTTCATC
Flanking Amino Acid:
KPHRNQSKMKILPVASASQL
Intron Amino Acid Position:
1702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
82.3
0.73
0.9
82.4
34
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
54.3
0.12
2.1
73.34
38.7

Associated Gene:

Gene:
DOP1B
Ensembl Gene ID:
ENSAPLG00000015059
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015719
109884324 - 109924684
40361