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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109917908_109918146_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109917908 - 109918146
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTCTTTTCATT
Flanking Amino Acid:
SVQALSLLAEVLASLLDMVY
Intron Amino Acid Position:
1898

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
100
1.24
0.5
100
0
Major PPT
78.7
0.65
1
83.1
31.9
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
55.1
0.24
1.7
74.8
36.5

Associated Gene:

Gene:
DOP1B
Ensembl Gene ID:
ENSAPLG00000015059
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015719
109884324 - 109924684
40361