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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109918257_109919746_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109918257 - 109919746
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTTCT
5'SS Class:
major
3'SS Sequence:
TCTCTTCGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGATATTTATT
Flanking Amino Acid:
YYVFPYLRNHSTYNIPSFRA
Intron Amino Acid Position:
1934

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
77.5
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.5
0.57
0.9
68.8
37.2
Minor 5ss
42.9
-0.8
2.8
59.5
45
Minor BPS
48
-0
1.9
69.13
41.8

Associated Gene:

Gene:
DOP1B
Ensembl Gene ID:
ENSAPLG00000015059
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015719
109884324 - 109924684
40361