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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109920372_109921289_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109920372 - 109921289
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTATATGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TAATTCTTATAT
Flanking Amino Acid:
HEKTMFKDLMNMQSSALKLY
Intron Amino Acid Position:
2004

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
74.2
0.54
1
66.2
44.7
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
59.6
0.38
1.7
75.25
40.9

Associated Gene:

Gene:
DOP1B
Ensembl Gene ID:
ENSAPLG00000015059
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015719
109884324 - 109924684
40361