About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109922038_109922385_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109922038 - 109922385
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATCCCCATAACT
Flanking Amino Acid:
SLWPIMVTELIQTFLQLEED
Intron Amino Acid Position:
2093

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.3
0.68
1
79.5
37.9
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
66.3
0.59
1.6
81.27
39.8

Associated Gene:

Gene:
DOP1B
Ensembl Gene ID:
ENSAPLG00000015059
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015719
109884324 - 109924684
40361