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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109922442_109922941_F

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
109922442 - 109922941
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTAACTAACGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTGTTTTAATT
Flanking Amino Acid:
EDLTEEDEPSKSNSKISKHK
Intron Amino Acid Position:
2111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
87.4
26.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
58.7
0.2
1
51.9
41.5
Minor 5ss
41.1
-1
3.2
58.9
39.4
Minor BPS
68.4
0.66
1.3
79.54
37.3

Associated Gene:

Gene:
DOP1B
Ensembl Gene ID:
ENSAPLG00000015059
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015719
109884324 - 109924684
40361