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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109923092_109923567_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109923092 - 109923567
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CCATTTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GTTTTCTTACCA
Flanking Amino Acid:
FPPDRMQLFQMYKWAFVPEV
Intron Amino Acid Position:
2161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
78.7
0.65
0.9
76.1
37.6
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
71
0.65
1.6
79.59
36.6

Associated Gene:

Gene:
DOP1B
Ensembl Gene ID:
ENSAPLG00000015059
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015719
109884324 - 109924684
40361