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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109938230_109939358_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109938230 - 109939358
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATAAC
5'SS Class:
major
3'SS Sequence:
TTTTACATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTGTTTTTACAT
Flanking Amino Acid:
MNTEKLHKMLSFGFSEKSVM
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
74.7
35.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
85.3
0.8
0.8
82.5
33.5
Minor 5ss
34
-1.8
3.1
44.4
43.7
Minor BPS
52.1
0.15
1.7
68.97
42.3

Associated Gene:

Gene:
MORC3
Ensembl Gene ID:
ENSAPLG00000014621
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015271
109930482 - 109957407
26926