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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109940001_109941854_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109940001 - 109941854
Intron Length:
1854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATAATT
Flanking Amino Acid:
GTRIIIWNLRRDKNEKTEFD
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
81.4
0.71
0.7
80.7
30.9
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
68.4
0.66
1.6
84.17
37

Associated Gene:

Gene:
MORC3
Ensembl Gene ID:
ENSAPLG00000014621
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015271
109930482 - 109957407
26926