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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109944848_109949138_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109944848 - 109949138
Intron Length:
4291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTAAAAACT
Flanking Amino Acid:
KQDFDYTNEYRLTIAALGEK
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
75.1
41.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.9
0.65
0.9
76.9
37.3
Minor 5ss
42.3
-0.8
3
56.9
47.4
Minor BPS
50.9
0.11
2.2
81.75
39.5

Associated Gene:

Gene:
MORC3
Ensembl Gene ID:
ENSAPLG00000014621
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015271
109930482 - 109957407
26926