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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109949244_109949350_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109949244 - 109949350
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTTCATT
Flanking Amino Acid:
YPLALPVEEIQKQPDQTWVQ
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
100
1.24
0.5
100
0
Major PPT
90.4
0.91
0.7
85.2
28
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
62.8
0.48
1.7
81.14
35.2

Associated Gene:

Gene:
MORC3
Ensembl Gene ID:
ENSAPLG00000014621
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015271
109930482 - 109957407
26926