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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109949474_109949585_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109949474 - 109949585
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAAATCT
5'SS Class:
major
3'SS Sequence:
TCCCTTAACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTCCCTTAACT
Flanking Amino Acid:
YCSLNPDPQFRDCNVPEEPE
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
68.8
36.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
71.1
0.48
0.9
69.7
34.3
Minor 5ss
40.4
-1.1
3.2
58.1
46
Minor BPS
92.4
1.41
0.8
102
22.5

Associated Gene:

Gene:
MORC3
Ensembl Gene ID:
ENSAPLG00000014621
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015271
109930482 - 109957407
26926