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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109949661_109950527_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109949661 - 109950527
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAG
U12 Branch Point Sequence:
TTTTCCTTGCTC
Flanking Amino Acid:
HPTYEKTYKKKDREKMKRRL
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
61.8
0.29
1.5
69.7
35.5
Major PPT
74.2
0.55
1
68.9
37.1
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
51.3
0.02
3.5
81.45
33.4

Associated Gene:

Gene:
MORC3
Ensembl Gene ID:
ENSAPLG00000014621
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015271
109930482 - 109957407
26926