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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109952180_109952744_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109952180 - 109952744
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATACAGTAACC
Flanking Amino Acid:
ISSPHSDSDNSLKRKTPGCV
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
78.8
30.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.3
0.88
0.6
88.8
20.5
Minor 5ss
28.4
-2.5
2.9
32.1
42.4
Minor BPS
48.1
-0.1
2.2
64.45
40.3

Associated Gene:

Gene:
MORC3
Ensembl Gene ID:
ENSAPLG00000014621
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015271
109930482 - 109957407
26926