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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109954141_109957253_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
109954141 - 109957253
Intron Length:
3113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAATT
5'SS Class:
weak_major
3'SS Sequence:
TATTTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TATACCTAAACA
Flanking Amino Acid:
EETVNFSDGESLKLRSLRVN
Intron Amino Acid Position:
879

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
77.2
37.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
85.2
0.79
0.8
80.2
31.4
Minor 5ss
53.7
0.13
2.6
75.3
40.4
Minor BPS
68.3
0.57
1.7
77.62
38.8

Associated Gene:

Gene:
MORC3
Ensembl Gene ID:
ENSAPLG00000014621
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015271
109930482 - 109957407
26926