About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109961763_109962476_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109961763 - 109962476
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
ATTTCTTTGACA
Flanking Amino Acid:
SGEILASGGDDAVILLWKLN
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.2
28.9
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
79.8
0.67
1
76.5
37
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
81
0.97
1
84.56
27.9

Associated Gene:

Gene:
CHAF1B
Ensembl Gene ID:
ENSAPLG00000014150
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014815
109960153 - 109974306
14154