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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109964321_109966596_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109964321 - 109966596
Intron Length:
2276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CTGTTTGTAATT
Flanking Amino Acid:
NTAIMWDVNKGQKVSILNEH
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
82.1
0.72
0.9
78.9
38.5
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
51.3
0.12
2
70.08
42.4

Associated Gene:

Gene:
CHAF1B
Ensembl Gene ID:
ENSAPLG00000014150
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014815
109960153 - 109974306
14154