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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109969146_109969765_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
109969146 - 109969765
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGACTTGATG
Flanking Amino Acid:
TPDGSLLLTPAGCVESGENV
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
79.7
35.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
88.6
0.87
0.7
83.9
31
Minor 5ss
41.2
-1
2.5
50.1
46.4
Minor BPS
58.9
0.14
1.7
67.26
40.9

Associated Gene:

Gene:
CHAF1B
Ensembl Gene ID:
ENSAPLG00000014150
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014815
109960153 - 109974306
14154