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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109969836_109969918_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
109969836 - 109969918
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTTT
5'SS Class:
major
3'SS Sequence:
CTCTTCACAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GATTTCTAAAAT
Flanking Amino Acid:
TYVFSRNNLKRPIGHLPCPG
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
72.8
39.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
60
0.22
1.1
61.3
32.7
Minor 5ss
40.6
-1
3.8
63.6
48.1
Minor BPS
58.6
0.35
1.8
74.99
41.3

Associated Gene:

Gene:
CHAF1B
Ensembl Gene ID:
ENSAPLG00000014150
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014815
109960153 - 109974306
14154