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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109972583_109973602_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109972583 - 109973602
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
AGTACTTGAACT
Flanking Amino Acid:
NTLQAWSKTPRRINLITLKP
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
73.5
0.53
1
74
34.5
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
63.8
0.51
1.5
77.28
38.5

Associated Gene:

Gene:
CHAF1B
Ensembl Gene ID:
ENSAPLG00000014150
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014815
109960153 - 109974306
14154