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Intron Name: Anas_platyrhynchos_platyrhynchos_1_110097886_110098162_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110097886 - 110098162

Intron Length:

277

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGCGCCGC

5'SS Class:

major

3'SS Sequence:

GGTTCCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTAAC

U12 Branch Point Sequence:

GTCTAACCAACT

Flanking Amino Acid:

MWGSRRRLGTAE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.7

0.3

1.1

45.2

44.9

Major BPS

66.8

0.42

1.2

69.6

35.5

Major PPT

0.68

0.9

73.2

37.1

Minor 5ss

31.3

-2.1

3.2

32.9

42.2

Minor BPS

42.9

-0.4

2.2

64.59

44.7

Associated Gene:

Gene:

SIM2

Ensembl Gene ID:

ENSAPLG00000014050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014645

110097602 - 110142531

44930