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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110105012_110119075_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110105012 - 110119075
Intron Length:
14064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGACCT
5'SS Class:
major
3'SS Sequence:
TTTATGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TCTTCAGTAAAA
Flanking Amino Acid:
NEVLLVSGIGKYEIERSFFL
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
64.5
39.6
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
84.5
0.78
0.8
81.3
36.2
Minor 5ss
36.5
-1.5
3.2
51.6
39.6
Minor BPS
49.4
-0
2.3
69.75
42.3

Associated Gene:

Gene:
SIM2
Ensembl Gene ID:
ENSAPLG00000014050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017180
110104446 - 110142531
38086