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Intron Name: Anas_platyrhynchos_platyrhynchos_1_110119162_110121397_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110119162 - 110121397

Intron Length:

2236

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGTAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCATGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTCTTTTCATG

Flanking Amino Acid:

NAGLTCSGYKVIHCSGYLKI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

77.6

33.1

Major BPS

100

1.24

0.5

100

Major PPT

76.2

0.59

70.2

40.1

Minor 5ss

38.5

-1.3

3.4

55.5

48.6

Minor BPS

52.6

-0

1.8

63.63

39.2

Associated Gene:

Gene:

SIM2

Ensembl Gene ID:

ENSAPLG00000014050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014645

110097602 - 110142531

44930

ENSAPLT00000017180

110104446 - 110142531

38086