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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110121598_110124951_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110121598 - 110124951
Intron Length:
3354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTGCTTATTA
Flanking Amino Acid:
LDLKLIFLDSRVTELTGYEP
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.6
0.76
0.7
76.7
31.9
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
63.1
0.41
2
78.93
38.2

Associated Gene:

Gene:
SIM2
Ensembl Gene ID:
ENSAPLG00000014050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014645
110097602 - 110142531
44930
ENSAPLT00000017180
110104446 - 110142531
38086