About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110125059_110130749_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110125059 - 110130749
Intron Length:
5691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ATTTTATTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
VFHLRYAHHLLLVKGQVTTK
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.7
0.74
0.8
77.2
35.5
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
SIM2
Ensembl Gene ID:
ENSAPLG00000014050
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017180
110104446 - 110142531
38086
ENSAPLT00000014645
110097602 - 110142531
44930