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Intron Name: Anas_platyrhynchos_platyrhynchos_1_110130898_110132879_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110130898 - 110132879

Intron Length:

1982

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAC|GTAAGTCAA

5'SS Class:

major

3'SS Sequence:

TTTGTTTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTGGAC

U12 Branch Point Sequence:

TTTTTTTTGTTT

Flanking Amino Acid:

HCIVSVNYVLTDIEYKELQL

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.3

74.1

38.3

Major BPS

52.7

0.07

1.4

54.8

42.1

Major PPT

88.3

0.86

0.7

84.9

29.9

Minor 5ss

34.9

-1.7

2.9

40.4

38.9

Minor BPS

46.8

-0.1

3.4

81.5

34.7

Associated Gene:

Gene:

SIM2

Ensembl Gene ID:

ENSAPLG00000014050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017180

110104446 - 110142531

38086

ENSAPLT00000014645

110097602 - 110142531

44930