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Intron Name: Anas_platyrhynchos_platyrhynchos_1_110133049_110134000_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110133049 - 110134000

Intron Length:

952

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTTTT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCCCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAC

U12 Branch Point Sequence:

ACTCTCTTACCC

Flanking Amino Acid:

KLRTTPYPQQQYSSFQTDKL

Intron Amino Acid Position:

298

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

1.1

87.9

29.3

Major BPS

71.9

0.54

1.2

75.6

36.6

Major PPT

80.3

0.68

0.7

72.9

Minor 5ss

55.9

0.2

2.5

39.7

Minor BPS

0.23

1.6

65.52

40.2

Associated Gene:

Gene:

SIM2

Ensembl Gene ID:

ENSAPLG00000014050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017180

110104446 - 110142531

38086

ENSAPLT00000014645

110097602 - 110142531

44930