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Intron Name: Anas_platyrhynchos_platyrhynchos_1_110134410_110141803_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110134410 - 110141803

Intron Length:

7394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCCTGCAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

TCTCCAGTAATT

Flanking Amino Acid:

IRHNLAQSYEVPISNRRYNQ

Intron Amino Acid Position:

434

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

75.7

34.4

Major BPS

0.52

1.1

77.7

35.3

Major PPT

67.6

0.4

1.1

37.9

Minor 5ss

30.4

-2.2

3.5

42.4

45.1

Minor BPS

49.6

0.05

2.2

74.4

42.6

Associated Gene:

Gene:

SIM2

Ensembl Gene ID:

ENSAPLG00000014050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017180

110104446 - 110142531

38086

ENSAPLT00000014645

110097602 - 110142531

44930