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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110150603_110151063_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110150603 - 110151063
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAACGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCTTTAACG
Flanking Amino Acid:
LPRYYKYWIHSGKQVHLYNE
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.9
0.47
1
66.6
38.5
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
87.8
1.05
1
87.23
30.1

Associated Gene:

Gene:
HLCS
Ensembl Gene ID:
ENSAPLG00000013775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014362
110150434 - 110270750
120317