About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110157674_110158708_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110157674 - 110158708
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
CTGTGTTGAAAG
Flanking Amino Acid:
AIAVRQTQGKGRGGNVWLSP
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
79.1
36.4
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
74.4
0.55
0.7
65.8
30.3
Minor 5ss
31.4
-2.1
2.4
33.7
41.6
Minor BPS
44.6
-0.5
2
48.83
45

Associated Gene:

Gene:
HLCS
Ensembl Gene ID:
ENSAPLG00000013775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014362
110150434 - 110270750
120317