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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110158777_110228351_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110158777 - 110228351
Intron Length:
69575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACAG
5'SS Class:
major
3'SS Sequence:
CCTTAATTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TTTTCCTTAATT
Flanking Amino Acid:
VTTTTMNLLDGLMFKLPEEM
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
62.5
43.8
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
69.9
0.45
1
65.4
39.8
Minor 5ss
30.9
-2.2
3
31.2
42.3
Minor BPS
95.9
1.52
0.5
104
16.3

Associated Gene:

Gene:
HLCS
Ensembl Gene ID:
ENSAPLG00000013775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014362
110150434 - 110270750
120317