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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110261042_110263779_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110261042 - 110263779
Intron Length:
2738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTAACTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTATTTAACT
Flanking Amino Acid:
DNGMVPHKIVSVHLQESTLK
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79
0.65
0.9
70
41
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
77.7
0.95
1.4
90.36
32.9

Associated Gene:

Gene:
HLCS
Ensembl Gene ID:
ENSAPLG00000013775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014362
110150434 - 110270750
120317